5QDX
PanDDA analysis group deposition -- Crystal structure of PTP1B in complex with compound_FMOPL000484a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92819 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 90.286, 90.286, 106.445 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.997 - 2.062 |
R-factor | 0.2389 |
Rwork | 0.238 |
R-free | 0.27340 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.025 |
RMSD bond angle | 2.274 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 63.016 | 63.016 | 2.180 |
High resolution limit [Å] | 2.060 | 6.150 | 2.060 |
Rmerge | 0.162 | 0.029 | 1.447 |
Rmeas | 0.182 | 0.033 | 1.637 |
Total number of observations | 285710 | ||
Number of reflections | 57669 | 2262 | 9009 |
<I/σ(I)> | 11.9 | 41.37 | 1.26 |
Completeness [%] | 95.9 | 99.9 | 92.9 |
CC(1/2) | 0.992 | 0.999 | 0.853 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 277 | well solution: 0.3 M magnesium acetate, 0.1 M HEPES pH 7.5, 0.1% beta-mercaptoethanol, 13-14% PEG 8000, 2% ethanol |