5Q8A
PanDDA analysis group deposition -- Crystal Structure of DCLRE1A after initial refinement with no ligand modelled (structure 219)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Detector technology | PIXEL |
| Collection date | 2017-04-12 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.92 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 51.986, 56.883, 115.118 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 56.880 - 1.430 |
| R-factor | 0.203 |
| Rwork | 0.202 |
| R-free | 0.23300 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5aho |
| RMSD bond length | 0.024 |
| RMSD bond angle | 2.129 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.31) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 56.880 | 56.880 | 1.470 |
| High resolution limit [Å] | 1.430 | 6.400 | 1.430 |
| Rmerge | 0.050 | 0.019 | 1.420 |
| Rmeas | 0.054 | 0.021 | 1.573 |
| Rpim | 0.021 | 0.009 | 0.667 |
| Total number of observations | 397767 | 4974 | 24976 |
| Number of reflections | 63796 | ||
| <I/σ(I)> | 13.9 | 60.9 | 1 |
| Completeness [%] | 99.8 | 99.9 | 99.4 |
| Redundancy | 6.2 | 6 | 5.4 |
| CC(1/2) | 0.999 | 0.999 | 0.554 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6 | 298 | 30% PEG 1000, 0.1M MIB buffer |
