5Q5F
PanDDA analysis group deposition -- Crystal Structure of DCLRE1A after initial refinement with no ligand modelled (structure 116)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Detector technology | PIXEL |
Collection date | 2017-04-11 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 51.971, 56.940, 115.127 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 56.930 - 1.470 |
R-factor | 0.2059 |
Rwork | 0.204 |
R-free | 0.23470 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5aho |
RMSD bond length | 0.022 |
RMSD bond angle | 1.993 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.31) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 56.930 | 56.930 | 1.510 |
High resolution limit [Å] | 1.470 | 6.570 | 1.470 |
Rmerge | 0.072 | 0.037 | 1.509 |
Rmeas | 0.078 | 0.041 | 1.659 |
Rpim | 0.031 | 0.016 | 0.683 |
Total number of observations | 372768 | 4675 | 24966 |
Number of reflections | 59007 | ||
<I/σ(I)> | 10.2 | 33.1 | 1.1 |
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 6.3 | 6 | 5.8 |
CC(1/2) | 0.999 | 0.999 | 0.555 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 298 | 30% PEG 1000, 0.1M MIB buffer |