5Q47
PanDDA analysis group deposition -- Crystal Structure of DCLRE1A after initial refinement with no ligand modelled (structure 72)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Detector technology | PIXEL |
| Collection date | 2016-09-29 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.92 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 52.285, 57.612, 115.567 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 28.890 - 1.380 |
| R-factor | 0.2031 |
| Rwork | 0.202 |
| R-free | 0.22900 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5aho |
| RMSD bond length | 0.028 |
| RMSD bond angle | 2.323 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.27) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 28.890 | 28.890 | 1.420 |
| High resolution limit [Å] | 1.380 | 6.180 | 1.380 |
| Rmerge | 0.052 | 0.049 | 0.723 |
| Rmeas | 0.057 | 0.054 | 0.805 |
| Rpim | 0.022 | 0.022 | 0.349 |
| Total number of observations | 458361 | 5541 | 26645 |
| Number of reflections | 72274 | ||
| <I/σ(I)> | 16.4 | 41.9 | 2.1 |
| Completeness [%] | 99.8 | 98.9 | 97.8 |
| Redundancy | 6.3 | 5.9 | 5.2 |
| CC(1/2) | 0.998 | 0.994 | 0.793 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6 | 298 | 30% PEG 1000, 0.1M MIB buffer |
