5PYR
PanDDA analysis group deposition -- Crystal Structure of SP100 after initial refinement with no ligand modelled (structure 87)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2015-04-02 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.9200 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 127.530, 45.380, 83.240 |
| Unit cell angles | 90.00, 102.06, 90.00 |
Refinement procedure
| Resolution | 42.640 - 1.940 |
| R-factor | 0.1668 |
| Rwork | 0.164 |
| R-free | 0.21200 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 4ptb |
| RMSD bond length | 0.019 |
| RMSD bond angle | 1.808 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.3.11) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 42.640 | 42.640 | 1.990 |
| High resolution limit [Å] | 1.940 | 8.680 | 1.940 |
| Rmerge | 0.072 | 0.026 | 0.571 |
| Rmeas | 0.086 | 0.032 | 0.679 |
| Rpim | 0.046 | 0.017 | 0.363 |
| Total number of observations | 116204 | 1406 | 8572 |
| Number of reflections | 34162 | ||
| <I/σ(I)> | 13.4 | 52.2 | 2.2 |
| Completeness [%] | 98.2 | 98.7 | 98.2 |
| Redundancy | 3.4 | 3.3 | 3.4 |
| CC(1/2) | 0.998 | 0.999 | 0.722 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 0.1M MES pH 6.1 -- 20% PEG20K |
