5PYJ
PanDDA analysis group deposition -- Crystal Structure of SP100 after initial refinement with no ligand modelled (structure 79)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2015-04-02 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.9200 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 127.650, 45.550, 83.610 |
| Unit cell angles | 90.00, 101.83, 90.00 |
Refinement procedure
| Resolution | 39.070 - 1.970 |
| R-factor | 0.1945 |
| Rwork | 0.192 |
| R-free | 0.24110 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 4ptb |
| RMSD bond length | 0.017 |
| RMSD bond angle | 1.692 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.3.11) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 39.070 | 39.070 | 2.020 |
| High resolution limit [Å] | 1.970 | 8.810 | 1.970 |
| Rmerge | 0.128 | 0.033 | 0.690 |
| Rmeas | 0.153 | 0.039 | 0.829 |
| Rpim | 0.083 | 0.021 | 0.451 |
| Total number of observations | 105240 | 1281 | 7874 |
| Number of reflections | 31533 | ||
| <I/σ(I)> | 11.9 | 54.1 | 1.9 |
| Completeness [%] | 94.1 | 95.1 | 96.3 |
| Redundancy | 3.3 | 3.3 | 3.3 |
| CC(1/2) | 0.992 | 0.998 | 0.685 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 0.1M MES pH 6.1 -- 20% PEG20K |
