5PXT
PanDDA analysis group deposition -- Crystal Structure of SP100 after initial refinement with no ligand modelled (structure 53)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2015-04-02 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.9200 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 127.782, 45.362, 83.466 |
| Unit cell angles | 90.00, 102.27, 90.00 |
Refinement procedure
| Resolution | 28.460 - 1.400 |
| R-factor | 0.1775 |
| Rwork | 0.176 |
| R-free | 0.20240 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 4ptb |
| RMSD bond length | 0.027 |
| RMSD bond angle | 2.258 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.3.11) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 28.460 | 28.460 | 1.440 |
| High resolution limit [Å] | 1.400 | 6.260 | 1.400 |
| Rmerge | 0.049 | 0.035 | 0.794 |
| Rmeas | 0.058 | 0.042 | 0.942 |
| Rpim | 0.031 | 0.022 | 0.501 |
| Total number of observations | 307039 | 3736 | 22457 |
| Number of reflections | 89966 | ||
| <I/σ(I)> | 14.5 | 44.9 | 1.9 |
| Completeness [%] | 97.8 | 96.6 | 97.1 |
| Redundancy | 3.4 | 3.5 | 3.4 |
| CC(1/2) | 0.998 | 0.997 | 0.600 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 0.1M MES pH 6.1 -- 20% PEG20K |
