5PVR
PanDDA analysis group deposition -- Crystal Structure of BRD1 after initial refinement with no ligand modelled (structure 242)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2014-08-28 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.9200 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 55.355, 56.532, 101.814 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 50.910 - 1.570 |
| R-factor | 0.2007 |
| Rwork | 0.199 |
| R-free | 0.23510 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5amf |
| RMSD bond length | 0.021 |
| RMSD bond angle | 1.874 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.3.11) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.910 | 50.910 | 1.650 |
| High resolution limit [Å] | 1.570 | 4.960 | 1.570 |
| Rmerge | 0.065 | 0.033 | 0.511 |
| Rmeas | 0.071 | 0.036 | 0.570 |
| Rpim | 0.029 | 0.015 | 0.249 |
| Total number of observations | 264920 | 10685 | 31645 |
| Number of reflections | 45125 | ||
| <I/σ(I)> | 15 | 39.8 | 2.7 |
| Completeness [%] | 99.4 | 100 | 98.6 |
| Redundancy | 5.9 | 6.7 | 4.9 |
| CC(1/2) | 0.997 | 0.993 | 0.826 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1M bis-tris pH 7.0 -- 30% PEG3350 |
