5PVQ
PanDDA analysis group deposition -- Crystal Structure of BRD1 after initial refinement with no ligand modelled (structure 241)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2014-08-28 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.9200 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 55.583, 56.600, 101.841 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 50.920 - 1.610 |
| R-factor | 0.215 |
| Rwork | 0.213 |
| R-free | 0.25540 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5amf |
| RMSD bond length | 0.019 |
| RMSD bond angle | 1.776 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.3.11) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.920 | 55.580 | 1.700 |
| High resolution limit [Å] | 1.610 | 5.090 | 1.610 |
| Rmerge | 0.123 | 0.049 | 1.108 |
| Rmeas | 0.136 | 0.053 | 1.250 |
| Rpim | 0.056 | 0.021 | 0.565 |
| Total number of observations | 234793 | 9897 | 27290 |
| Number of reflections | 40801 | ||
| <I/σ(I)> | 11.5 | 28.9 | 2.6 |
| Completeness [%] | 96.6 | 99.7 | 91.6 |
| Redundancy | 5.8 | 6.7 | 4.9 |
| CC(1/2) | 0.993 | 0.995 | 0.360 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1M bis-tris pH 7.0 -- 30% PEG3350 |
