5PVD
PanDDA analysis group deposition -- Crystal Structure of BRD1 after initial refinement with no ligand modelled (structure 227)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2014-08-28 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.9200 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 55.408, 56.537, 101.788 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 48.660 - 1.530 |
| R-factor | 0.2069 |
| Rwork | 0.205 |
| R-free | 0.24120 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5amf |
| RMSD bond length | 0.022 |
| RMSD bond angle | 1.918 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.3.11) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 48.660 | 48.660 | 1.600 |
| High resolution limit [Å] | 1.530 | 5.070 | 1.530 |
| Rmerge | 0.104 | 0.056 | 0.615 |
| Rmeas | 0.114 | 0.061 | 0.684 |
| Rpim | 0.046 | 0.024 | 0.295 |
| Total number of observations | 283083 | 9873 | 33211 |
| Number of reflections | 48632 | ||
| <I/σ(I)> | 10.7 | 25.6 | 2.9 |
| Completeness [%] | 99.3 | 99.9 | 99.3 |
| Redundancy | 5.8 | 6.6 | 5.2 |
| CC(1/2) | 0.996 | 0.995 | 0.757 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1M bis-tris pH 7.0 -- 30% PEG3350 |
