5PTB
PanDDA analysis group deposition -- Crystal Structure of BRD1 after initial refinement with no ligand modelled (structure 155)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-08-28 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9200 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 55.150, 56.458, 101.224 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 21.350 - 1.880 |
R-factor | 0.2004 |
Rwork | 0.198 |
R-free | 0.24140 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5amf |
RMSD bond length | 0.017 |
RMSD bond angle | 1.673 |
Data reduction software | XDS |
Data scaling software | Aimless (0.3.6) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 21.350 | 21.350 | 2.030 |
High resolution limit [Å] | 1.880 | 4.970 | 1.880 |
Rmerge | 0.082 | 0.031 | 0.546 |
Rmeas | 0.099 | 0.036 | 0.658 |
Rpim | 0.054 | 0.019 | 0.360 |
Total number of observations | 145603 | 9581 | 30828 |
Number of reflections | 47028 | ||
<I/σ(I)> | 8.4 | 21.2 | 2.1 |
Completeness [%] | 93.5 | 98.1 | 95.6 |
Redundancy | 3.1 | 3.5 | 3.1 |
CC(1/2) | 0.996 | 0.999 | 0.665 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1M bis-tris pH 7.0 -- 30% PEG3350 |