5PS5
PanDDA analysis group deposition -- Crystal Structure of BRD1 after initial refinement with no ligand modelled (structure 113)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-08-28 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9200 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 55.912, 56.678, 102.087 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.170 - 2.150 |
R-factor | 0.1949 |
Rwork | 0.193 |
R-free | 0.23230 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5amf |
RMSD bond length | 0.016 |
RMSD bond angle | 1.632 |
Data reduction software | XDS |
Data scaling software | Aimless (0.3.6) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.170 | 29.170 | 2.200 |
High resolution limit [Å] | 2.150 | 9.600 | 2.150 |
Rmerge | 0.182 | 0.033 | 1.000 |
Rmeas | 0.198 | 0.036 | 1.091 |
Rpim | 0.076 | 0.015 | 0.430 |
Total number of observations | 118487 | 1403 | 7950 |
Number of reflections | 18126 | ||
<I/σ(I)> | 10.4 | 46 | 2 |
Completeness [%] | 98.6 | 96.3 | 96.1 |
Redundancy | 6.5 | 5.8 | 6.2 |
CC(1/2) | 0.993 | 0.999 | 0.735 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1M bis-tris pH 7.0 -- 30% PEG3350 |