5PRK
PanDDA analysis group deposition -- Crystal Structure of BRD1 after initial refinement with no ligand modelled (structure 92)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2014-08-28 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.9200 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 53.108, 56.539, 100.969 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 28.920 - 2.230 |
| R-factor | 0.317 |
| Rwork | 0.315 |
| R-free | 0.36210 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5amf |
| RMSD bond length | 0.013 |
| RMSD bond angle | 1.545 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.3.6) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 28.920 | 28.920 | 2.290 |
| High resolution limit [Å] | 2.230 | 9.960 | 2.230 |
| Rmerge | 0.114 | 0.024 | 0.911 |
| Rmeas | 0.124 | 0.026 | 1.002 |
| Rpim | 0.048 | 0.010 | 0.409 |
| Total number of observations | 100176 | 1178 | 6192 |
| Number of reflections | 15394 | ||
| <I/σ(I)> | 13.8 | 56.3 | 2 |
| Completeness [%] | 99.5 | 96 | 97.6 |
| Redundancy | 6.5 | 5.7 | 5.7 |
| CC(1/2) | 0.998 | 1.000 | 0.786 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1M bis-tris pH 7.0 -- 30% PEG3350 |
