5PPR
PanDDA analysis group deposition -- Crystal Structure of BRD1 after initial refinement with no ligand modelled (structure 28)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2014-08-28 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.9200 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 55.734, 56.316, 102.505 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 29.210 - 2.690 |
| R-factor | 0.4639 |
| Rwork | 0.464 |
| R-free | 0.47000 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5amf |
| RMSD bond length | 0.010 |
| RMSD bond angle | 1.304 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.3.6) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 29.210 | 29.210 | 2.760 |
| High resolution limit [Å] | 2.690 | 12.040 | 2.690 |
| Rmerge | 0.139 | 1.872 | 0.919 |
| Rmeas | 1.510 | 2.037 | 1.004 |
| Rpim | 0.589 | 0.788 | 0.396 |
| Total number of observations | 60930 | 735 | 3804 |
| Number of reflections | 9350 | ||
| <I/σ(I)> | 1.7 | 1.5 | 1.2 |
| Completeness [%] | 99.1 | 94 | 92.1 |
| Redundancy | 6.5 | 5.6 | 6.1 |
| CC(1/2) | 0.420 | 0.790 | 0.507 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1M bis-tris pH 7.0 -- 30% PEG3350 |
