5PPP
PanDDA analysis group deposition -- Crystal Structure of BRD1 after initial refinement with no ligand modelled (structure 26)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-08-28 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9200 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 55.200, 56.320, 101.840 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.530 - 1.680 |
R-factor | 0.1746 |
Rwork | 0.173 |
R-free | 0.20790 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5amf |
RMSD bond length | 0.022 |
RMSD bond angle | 1.933 |
Data reduction software | XDS |
Data scaling software | Aimless (0.3.6) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.530 | 48.530 | 1.720 |
High resolution limit [Å] | 1.680 | 7.510 | 1.680 |
Rmerge | 0.063 | 0.021 | 0.848 |
Rmeas | 0.068 | 0.023 | 0.915 |
Rpim | 0.026 | 0.009 | 0.342 |
Total number of observations | 245562 | 2962 | 18740 |
Number of reflections | 36749 | ||
<I/σ(I)> | 18.6 | 62.4 | 2.5 |
Completeness [%] | 99.5 | 99.4 | 99.6 |
Redundancy | 6.7 | 6 | 7 |
CC(1/2) | 0.999 | 0.999 | 0.825 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1M bis-tris pH 7.0 -- 30% PEG3350 |