5PNX
PanDDA analysis group deposition -- Crystal Structure of BRD1 in complex with N10128a
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2014-08-28 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.9200 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 55.413, 56.424, 101.725 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 21.687 - 1.470 |
| R-factor | 0.1897 |
| Rwork | 0.189 |
| R-free | 0.21200 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5amf |
| RMSD bond length | 0.006 |
| RMSD bond angle | 0.923 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.3.6) |
| Phasing software | REFMAC |
| Refinement software | PHENIX (1.9_1682) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 21.687 | 21.690 | 1.540 |
| High resolution limit [Å] | 1.470 | 5.090 | 1.470 |
| Rmerge | 0.060 | 0.044 | 0.572 |
| Rmeas | 0.066 | 0.048 | 0.628 |
| Rpim | 0.027 | 0.019 | 0.256 |
| Total number of observations | 319382 | 9361 | 39429 |
| Number of reflections | 54910 | ||
| <I/σ(I)> | 14.3 | 37.9 | 2.9 |
| Completeness [%] | 99.7 | 98.7 | 99.9 |
| Redundancy | 5.8 | 6.4 | 5.9 |
| CC(1/2) | 0.998 | 0.994 | 0.795 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1M bis-tris pH 7.0 -- 30% PEG3350 |
