5PH4
PanDDA analysis group deposition -- Crystal Structure of JMJD2D in complex with N09597a
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I03 |
| Synchrotron site | Diamond |
| Beamline | I03 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2012-12-15 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.97630 |
| Spacegroup name | P 43 21 2 |
| Unit cell lengths | 71.499, 71.499, 150.416 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 29.426 - 1.269 |
| R-factor | 0.1324 |
| Rwork | 0.131 |
| R-free | 0.16290 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 4d6r |
| RMSD bond length | 0.006 |
| RMSD bond angle | 1.096 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.1.27) |
| Phasing software | REFMAC |
| Refinement software | PHENIX (1.9_1682) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 29.426 | 29.430 | 1.290 |
| High resolution limit [Å] | 1.270 | 6.950 | 1.270 |
| Rmerge | 0.056 | 0.039 | 0.659 |
| Rmeas | 0.059 | 0.041 | 0.773 |
| Rpim | 0.017 | 0.012 | 0.394 |
| Total number of observations | 1089710 | 8442 | 13268 |
| Number of reflections | 101889 | ||
| <I/σ(I)> | 22.7 | 62.4 | 1.7 |
| Completeness [%] | 98.4 | 98.8 | 80.5 |
| Redundancy | 10.7 | 11.1 | 3.3 |
| CC(1/2) | 0.999 | 0.999 | 0.668 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | 28% PEG3350 -- 0.1M HEPES pH 7.0 -- 0.25M ammonium sulfate |
