5PD5
PanDDA analysis group deposition -- Crystal Structure of BAZ2B after initial refinement with no ligand modelled (structure 61)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-03-10 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9200 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 82.644, 97.515, 58.302 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.150 - 1.890 |
R-factor | 0.1764 |
Rwork | 0.175 |
R-free | 0.20610 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 3g0l |
RMSD bond length | 0.024 |
RMSD bond angle | 1.982 |
Data reduction software | XDS |
Data scaling software | Aimless (0.1.29) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.150 | 29.150 | 1.930 |
High resolution limit [Å] | 1.890 | 9.070 | 1.890 |
Rmerge | 0.078 | 0.033 | 0.892 |
Rmeas | 0.085 | 0.036 | 0.981 |
Rpim | 0.033 | 0.014 | 0.399 |
Total number of observations | 120847 | 1243 | 5772 |
Number of reflections | 18981 | ||
<I/σ(I)> | 12.8 | 38.5 | 1.5 |
Completeness [%] | 98.9 | 97.4 | 87.8 |
Redundancy | 6.4 | 6.1 | 5.4 |
CC(1/2) | 0.999 | 0.999 | 0.754 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 30% PEG600 -- 0.1M MES pH 6.0 |