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5P6O

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 285

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2013-07-18
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.91841
Spacegroup nameP 1 21 1
Unit cell lengths45.332, 73.052, 52.758
Unit cell angles90.00, 109.53, 90.00
Refinement procedure
Resolution19.801 - 1.130
R-factor0.1729
Rwork0.172
R-free0.18750
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.007
RMSD bond angle1.170
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]19.8011.200
High resolution limit [Å]1.1303.3501.130
Rmerge0.0640.0360.475
Rmeas0.0750.0420.555
Total number of observations435671
Number of reflections117892465418348
<I/σ(I)>11.1732.642.51
Completeness [%]97.597.794.3
Redundancy3.695
CC(1/2)0.9980.9970.797
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 285 with the SMILES code CC(=O)NC1=CC=CC(CN)=C1

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