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5P51

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 226

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.3
Synchrotron siteBESSY
Beamline14.3
Temperature [K]100
Detector technologyCCD
Collection date2013-04-18
DetectorMAR CCD 165 mm
Wavelength(s)0.8944
Spacegroup nameP 1 21 1
Unit cell lengths45.235, 73.154, 52.701
Unit cell angles90.00, 109.22, 90.00
Refinement procedure
Resolution27.782 - 1.119
R-factor0.1314
Rwork0.131
R-free0.14910
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.006
RMSD bond angle1.202
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.7141.190
High resolution limit [Å]1.1203.3501.120
Rmerge0.0450.0220.365
Rmeas0.0560.0260.498
Total number of observations294231
Number of reflections115035427214352
<I/σ(I)>14.6448.772.43
Completeness [%]92.489.871.6
Redundancy2.557
CC(1/2)0.9990.9980.753
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 226 with the SMILES code FC(F)(F)[C@@H]1C[C@@H](NC2=C(C=NN12)C#N)C1CC1

219869

PDB entries from 2024-05-15

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