5P51
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 226
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.3 |
Synchrotron site | BESSY |
Beamline | 14.3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-04-18 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 0.8944 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.235, 73.154, 52.701 |
Unit cell angles | 90.00, 109.22, 90.00 |
Refinement procedure
Resolution | 27.782 - 1.119 |
R-factor | 0.1314 |
Rwork | 0.131 |
R-free | 0.14910 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4y5l |
RMSD bond length | 0.006 |
RMSD bond angle | 1.202 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.714 | 1.190 | |
High resolution limit [Å] | 1.120 | 3.350 | 1.120 |
Rmerge | 0.045 | 0.022 | 0.365 |
Rmeas | 0.056 | 0.026 | 0.498 |
Total number of observations | 294231 | ||
Number of reflections | 115035 | 4272 | 14352 |
<I/σ(I)> | 14.64 | 48.77 | 2.43 |
Completeness [%] | 92.4 | 89.8 | 71.6 |
Redundancy | 2.557 | ||
CC(1/2) | 0.999 | 0.998 | 0.753 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 226 with the SMILES code FC(F)(F)[C@@H]1C[C@@H](NC2=C(C=NN12)C#N)C1CC1 |