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5P4C

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 201

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.3
Synchrotron siteBESSY
Beamline14.3
Temperature [K]100
Detector technologyCCD
Collection date2014-06-04
DetectorMAR CCD 165 mm
Wavelength(s)0.895
Spacegroup nameP 1 21 1
Unit cell lengths45.326, 72.952, 52.793
Unit cell angles90.00, 109.39, 90.00
Refinement procedure
Resolution42.755 - 1.257
R-factor0.1308
Rwork0.130
R-free0.14870
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.006
RMSD bond angle1.203
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.7561.330
High resolution limit [Å]1.2603.7601.260
Rmerge0.0680.0380.564
Rmeas0.0780.0440.649
Total number of observations363184
Number of reflections87339333513691
<I/σ(I)>12.0732.512.34
Completeness [%]99.29996.5
Redundancy4.158
CC(1/2)0.9980.9970.779
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 201 with the SMILES code CC1=C(CCO)SC=N1

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PDB entries from 2024-05-15

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