5P45
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 194
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | BESSY BEAMLINE 14.1 |
| Synchrotron site | BESSY |
| Beamline | 14.1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2013-04-04 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.918409 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 45.304, 73.124, 52.767 |
| Unit cell angles | 90.00, 109.40, 90.00 |
Refinement procedure
| Resolution | 41.145 - 1.189 |
| R-factor | 0.1246 |
| Rwork | 0.124 |
| R-free | 0.13630 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4y5l |
| RMSD bond length | 0.006 |
| RMSD bond angle | 1.216 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER (2.5.7) |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 41.145 | 1.260 | |
| High resolution limit [Å] | 1.190 | 3.560 | 1.190 |
| Rmerge | 0.039 | 0.025 | 0.277 |
| Rmeas | 0.046 | 0.029 | 0.337 |
| Total number of observations | 357999 | ||
| Number of reflections | 98626 | 3952 | 11884 |
| <I/σ(I)> | 17.08 | 50.16 | 3.49 |
| Completeness [%] | 94.8 | 99.2 | 70.9 |
| Redundancy | 3.629 | ||
| CC(1/2) | 0.999 | 0.999 | 0.892 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 194 with the SMILES code CN1C=C(Br)C(=N1)N1C(=O)C=CC1=O |






