5P3N
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 176
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | BESSY BEAMLINE 14.1 |
| Synchrotron site | BESSY |
| Beamline | 14.1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2013-04-04 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.918409 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 45.225, 72.590, 104.208 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 42.329 - 1.439 |
| R-factor | 0.1391 |
| Rwork | 0.138 |
| R-free | 0.16840 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4y5l |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.171 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER (2.5.7) |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 45.225 | 1.530 | |
| High resolution limit [Å] | 1.440 | 4.300 | 1.440 |
| Rmerge | 0.057 | 0.019 | 0.474 |
| Rmeas | 0.063 | 0.021 | 0.529 |
| Total number of observations | 337583 | ||
| Number of reflections | 62654 | 2571 | 9869 |
| <I/σ(I)> | 20.31 | 69.43 | 3.32 |
| Completeness [%] | 99.3 | 99.7 | 98.1 |
| Redundancy | 5.388 | ||
| CC(1/2) | 0.999 | 1.000 | 0.870 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 176 with the SMILES code OC(=O)CN1C=C(Br)C=CC1=O |






