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5P36

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 159

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.3
Synchrotron siteBESSY
Beamline14.3
Temperature [K]100
Detector technologyCCD
Collection date2013-04-12
DetectorMAR CCD 165 mm
Wavelength(s)0.8944
Spacegroup nameP 1 21 1
Unit cell lengths45.232, 72.925, 52.613
Unit cell angles90.00, 109.35, 90.00
Refinement procedure
Resolution34.708 - 1.369
R-factor0.1519
Rwork0.150
R-free0.18320
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.008
RMSD bond angle1.169
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.6781.450
High resolution limit [Å]1.3704.0901.370
Rmerge0.0600.0190.477
Rmeas0.0700.0220.550
Total number of observations257644
Number of reflections66262249810503
<I/σ(I)>16.2650.642.91
Completeness [%]97.695.895.8
Redundancy3.888
CC(1/2)0.9990.9990.790
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 159 with the SMILES code C[C@H](N1CCCCCC1)C(=O)C1=CNC2=CC=CC=C12

219869

PDB entries from 2024-05-15

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