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5P34

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 157

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2013-04-04
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.918409
Spacegroup nameP 1 21 1
Unit cell lengths45.266, 73.095, 52.538
Unit cell angles90.00, 109.24, 90.00
Refinement procedure
Resolution42.738 - 1.209
R-factor0.1453
Rwork0.144
R-free0.16430
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.007
RMSD bond angle1.276
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.7381.280
High resolution limit [Å]1.2103.6201.210
Rmerge0.0560.0290.406
Rmeas0.0650.0330.501
Total number of observations347810
Number of reflections96308376013920
<I/σ(I)>12.7843.942.32
Completeness [%]97.799.187.6
Redundancy3.611
CC(1/2)0.9990.9980.784
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 157 with the SMILES code CC1=CC(NC(=O)C2=CC(Br)=CN=C2)=NO1

219869

PDB entries from 2024-05-15

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