5P34
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 157
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | BESSY BEAMLINE 14.1 |
| Synchrotron site | BESSY |
| Beamline | 14.1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2013-04-04 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.918409 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 45.266, 73.095, 52.538 |
| Unit cell angles | 90.00, 109.24, 90.00 |
Refinement procedure
| Resolution | 42.738 - 1.209 |
| R-factor | 0.1453 |
| Rwork | 0.144 |
| R-free | 0.16430 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4y5l |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.276 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER (2.5.7) |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 42.738 | 1.280 | |
| High resolution limit [Å] | 1.210 | 3.620 | 1.210 |
| Rmerge | 0.056 | 0.029 | 0.406 |
| Rmeas | 0.065 | 0.033 | 0.501 |
| Total number of observations | 347810 | ||
| Number of reflections | 96308 | 3760 | 13920 |
| <I/σ(I)> | 12.78 | 43.94 | 2.32 |
| Completeness [%] | 97.7 | 99.1 | 87.6 |
| Redundancy | 3.611 | ||
| CC(1/2) | 0.999 | 0.998 | 0.784 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 157 with the SMILES code CC1=CC(NC(=O)C2=CC(Br)=CN=C2)=NO1 |






