5P33
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 156
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | BESSY BEAMLINE 14.1 |
| Synchrotron site | BESSY |
| Beamline | 14.1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2013-04-04 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.918409 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 45.222, 73.204, 52.541 |
| Unit cell angles | 90.00, 109.26, 90.00 |
Refinement procedure
| Resolution | 42.692 - 1.260 |
| R-factor | 0.1396 |
| Rwork | 0.139 |
| R-free | 0.16150 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4y5l |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.274 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER (2.5.7) |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 42.692 | 1.340 | |
| High resolution limit [Å] | 1.260 | 3.770 | 1.260 |
| Rmerge | 0.049 | 0.022 | 0.395 |
| Rmeas | 0.057 | 0.025 | 0.463 |
| Total number of observations | 323864 | ||
| Number of reflections | 86098 | 3313 | 13524 |
| <I/σ(I)> | 15.07 | 55.78 | 2.97 |
| Completeness [%] | 98.7 | 99.3 | 96.3 |
| Redundancy | 3.761 | ||
| CC(1/2) | 0.999 | 0.999 | 0.869 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 156 with the SMILES code CC1=CC(C)=C(CNC(=O)C2=CC(Br)=CN=C2)C(=O)N1 |






