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5P2Z

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 152

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.2
Synchrotron siteBESSY
Beamline14.2
Temperature [K]100
Detector technologyCCD
Collection date2013-01-23
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.91841
Spacegroup nameP 1 21 1
Unit cell lengths45.218, 73.130, 52.588
Unit cell angles90.00, 109.19, 90.00
Refinement procedure
Resolution25.400 - 1.519
R-factor0.1408
Rwork0.139
R-free0.17850
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.008
RMSD bond angle1.153
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.7051.610
High resolution limit [Å]1.5204.5301.520
Rmerge0.0980.0280.664
Rmeas0.1120.0320.765
Total number of observations202923
Number of reflections4870919136944
<I/σ(I)>14.547.722.46
Completeness [%]97.599.186.1
Redundancy4.166
CC(1/2)0.9980.9990.743
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 152 with the SMILES code O=C(NN1C=NC2=CC=CC=C12)NC1=CC=CC=C1

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PDB entries from 2024-05-15

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