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5P2S

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 145

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.3
Synchrotron siteBESSY
Beamline14.3
Temperature [K]100
Detector technologyCCD
Collection date2014-06-04
DetectorMAR CCD 165 mm
Wavelength(s)0.895
Spacegroup nameP 1 21 1
Unit cell lengths45.271, 73.064, 52.920
Unit cell angles90.00, 109.57, 90.00
Refinement procedure
Resolution24.932 - 1.078
R-factor0.1309
Rwork0.130
R-free0.14460
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.006
RMSD bond angle1.222
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.6561.140
High resolution limit [Å]1.0803.2301.080
Rmerge0.0640.0280.639
Rmeas0.0730.0320.743
Total number of observations564549
Number of reflections138598523322067
<I/σ(I)>13.4244.362.23
Completeness [%]99.598.398.2
Redundancy4.073
CC(1/2)0.9990.9980.745
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 145 with the SMILES code NNC1=CC=CC=C1Br

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PDB entries from 2024-05-15

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