5P26
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 124
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-01-23 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.91841 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.267, 73.310, 52.856 |
Unit cell angles | 90.00, 109.25, 90.00 |
Refinement procedure
Resolution | 26.314 - 1.411 |
R-factor | 0.1324 |
Rwork | 0.131 |
R-free | 0.15380 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4y5l |
RMSD bond length | 0.007 |
RMSD bond angle | 1.174 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.737 | 1.500 | |
High resolution limit [Å] | 1.410 | 4.210 | 1.410 |
Rmerge | 0.066 | 0.024 | 0.479 |
Rmeas | 0.075 | 0.027 | 0.553 |
Total number of observations | 254528 | ||
Number of reflections | 61416 | 2406 | 8940 |
<I/σ(I)> | 15.75 | 49.25 | 3.11 |
Completeness [%] | 97.9 | 99 | 88.6 |
Redundancy | 4.144 | ||
CC(1/2) | 0.999 | 0.999 | 0.815 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 124 with the SMILES code CC1=NN(CC(=O)NC2CC2)C(C)=C1[N+]([O-])=O |