5P22
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 120
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.3 |
Synchrotron site | BESSY |
Beamline | 14.3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-02-15 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 0.8944 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.345, 72.938, 52.792 |
Unit cell angles | 90.00, 109.56, 90.00 |
Refinement procedure
Resolution | 28.094 - 1.309 |
R-factor | 0.1337 |
Rwork | 0.133 |
R-free | 0.15320 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4y5l |
RMSD bond length | 0.007 |
RMSD bond angle | 1.210 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.727 | 1.390 | |
High resolution limit [Å] | 1.310 | 3.910 | 1.310 |
Rmerge | 0.055 | 0.034 | 0.427 |
Rmeas | 0.064 | 0.039 | 0.492 |
Total number of observations | 322250 | ||
Number of reflections | 77597 | 2980 | 12452 |
<I/σ(I)> | 15.87 | 42.69 | 3.44 |
Completeness [%] | 99.6 | 98.8 | 98.9 |
Redundancy | 4.152 | ||
CC(1/2) | 0.998 | 0.998 | 0.861 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 120 with the SMILES code CC1=CC(NC(=O)CN2CCC3=CC=CC=C23)=NO1 |