5OZN
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 34
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | BESSY BEAMLINE 14.1 |
| Synchrotron site | BESSY |
| Beamline | 14.1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2012-09-04 |
| Detector | MARMOSAIC 225 mm CCD |
| Wavelength(s) | 0.91842 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 45.423, 73.257, 53.002 |
| Unit cell angles | 90.00, 109.75, 90.00 |
Refinement procedure
| Resolution | 41.232 - 1.489 |
| R-factor | 0.1583 |
| Rwork | 0.157 |
| R-free | 0.19150 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4y5l |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.190 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER (2.5.7) |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 42.751 | 1.580 | |
| High resolution limit [Å] | 1.490 | 4.440 | 1.490 |
| Rmerge | 0.074 | 0.030 | 0.462 |
| Rmeas | 0.085 | 0.034 | 0.536 |
| Total number of observations | 220548 | ||
| Number of reflections | 53305 | 2051 | 8493 |
| <I/σ(I)> | 14.05 | 38.62 | 2.9 |
| Completeness [%] | 99.5 | 98.6 | 98.5 |
| Redundancy | 4.137 | ||
| CC(1/2) | 0.998 | 0.998 | 0.820 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 34 with the SMILES code CCC1=CC=CC2=C1NC(=O)C(CNC1CC1)=C2 |






