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5OZE

Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 25

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyCCD
Collection date2012-11-16
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.91841
Spacegroup nameP 1 21 1
Unit cell lengths45.415, 73.104, 52.831
Unit cell angles90.00, 109.63, 90.00
Refinement procedure
Resolution42.776 - 1.241
R-factor0.1251
Rwork0.124
R-free0.14080
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4y5l
RMSD bond length0.007
RMSD bond angle1.206
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.7771.320
High resolution limit [Å]1.2403.7101.240
Rmerge0.0710.0550.314
Rmeas0.0820.0630.375
Total number of observations366393
Number of reflections90321350113547
<I/σ(I)>12.125.53.41
Completeness [%]98.499.291.7
Redundancy4.056
CC(1/2)0.9960.9930.885
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 25 with the SMILES code CCOC1=CC=C(C=C1)C1=CC(N)=NO1

219869

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