5OU8
Crystal structure of Glycoprotein VI in complex with collagen-peptide (GPO)5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-10-08 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97242 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 59.970, 59.970, 313.212 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 78.300 - 2.500 |
R-factor | 0.21051 |
Rwork | 0.208 |
R-free | 0.25739 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ou7 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.635 |
Data reduction software | iMOSFLM (1.0.7) |
Data scaling software | Aimless (0.1.30) |
Phasing software | PHASER (2.7.0) |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 78.300 | 2.610 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.121 | 1.030 |
Number of reflections | 20736 | 2463 |
<I/σ(I)> | 9.7 | 1.8 |
Completeness [%] | 99.5 | 99.8 |
Redundancy | 7.9 | 7.4 |
CC(1/2) | 0.995 | 0.535 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 293 | 0.1 M MES pH 6.0 0.2 M MgCl2 20% (w/v) PEG-6000 |