5OOW
Crystal structure of lobe II from the nucleotide binding domain of DnaK in complex with AMPPCP
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SLS BEAMLINE X06SA |
| Synchrotron site | SLS |
| Beamline | X06SA |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2016-12-16 |
| Detector | DECTRIS EIGER X 16M |
| Wavelength(s) | 1.00003 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 59.857, 64.203, 74.639 |
| Unit cell angles | 90.00, 113.31, 90.00 |
Refinement procedure
| Resolution | 54.740 - 2.900 |
| R-factor | 0.239 |
| Rwork | 0.239 |
| R-free | 0.24900 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4jn4 |
| RMSD bond length | 0.007 |
| RMSD bond angle | 0.900 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | BUSTER (2.10.3) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 54.740 | 3.080 |
| High resolution limit [Å] | 2.900 | 2.900 |
| Rmerge | 0.255 | 0.966 |
| Rpim | 0.157 | 0.597 |
| Number of reflections | 11517 | 1846 |
| <I/σ(I)> | 7.7 | |
| Completeness [%] | 98.7 | 99.4 |
| Redundancy | 6.9 | 6.7 |
| CC(1/2) | 0.979 | 0.730 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 25% PEG1500, 0.1 M MIB buffer pH 7.0 |
