5OK1
D10N variant of beta-phosphoglucomutase from Lactococcus lactis trapped with native beta-glucose 1,6-bisphosphate intermediate to 1.9A resolution.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-01-30 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97948 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 36.710, 74.490, 78.560 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.280 - 1.860 |
R-factor | 0.20011 |
Rwork | 0.198 |
R-free | 0.24559 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2wf5 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.494 |
Data reduction software | XDS |
Data scaling software | xia2 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.280 | 1.890 |
High resolution limit [Å] | 1.860 | 1.860 |
Rmerge | 0.062 | 1.972 |
Rpim | 0.018 | 0.558 |
Number of reflections | 18807 | 933 |
<I/σ(I)> | 25.8 | 1.2 |
Completeness [%] | 100.0 | 99.9 |
Redundancy | 12.9 | 13.3 |
CC(1/2) | 1.000 | 0.599 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.2 | 291 | 24-34% PEG 4000 200mM Tris pH 7.5 200mM sodium acetate harvested after ca. 12 weeks |