Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5OB6

X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RuII(CO)3Cl2(N3-IM), IM=imidazole

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyCCD
Collection date2014-06-26
DetectorRIGAKU SATURN 944
Wavelength(s)1.5418
Spacegroup nameP 43 21 2
Unit cell lengths79.776, 79.776, 36.637
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution56.410 - 1.880
R-factor0.17857
Rwork0.175
R-free0.24189
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)193l
RMSD bond length0.021
RMSD bond angle1.932
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]56.4101.920
High resolution limit [Å]1.8801.880
Rmerge0.0910.597
Number of reflections9931
<I/σ(I)>13.32.7
Completeness [%]98.2100
Redundancy5.13.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2981.1 M NaCl, 0.1 M sodium acetate at pH 4.0-4.4. Adduct was prepared by mixing the protein with the metallodrug in a 1:10 molar ratio for 24 h at room temperature before crystallization trials.

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon