5OB6
X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RuII(CO)3Cl2(N3-IM), IM=imidazole
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-06-26 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 79.776, 79.776, 36.637 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 56.410 - 1.880 |
R-factor | 0.17857 |
Rwork | 0.175 |
R-free | 0.24189 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 193l |
RMSD bond length | 0.021 |
RMSD bond angle | 1.932 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 56.410 | 1.920 |
High resolution limit [Å] | 1.880 | 1.880 |
Rmerge | 0.091 | 0.597 |
Number of reflections | 9931 | |
<I/σ(I)> | 13.3 | 2.7 |
Completeness [%] | 98.2 | 100 |
Redundancy | 5.1 | 3.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 1.1 M NaCl, 0.1 M sodium acetate at pH 4.0-4.4. Adduct was prepared by mixing the protein with the metallodrug in a 1:10 molar ratio for 24 h at room temperature before crystallization trials. |