5OB0
Crystal structure of the c-Src-SH3 domain Q128E mutant in complex with the high affinity peptide APP12
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-4 |
Synchrotron site | ESRF |
Beamline | ID14-4 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-02-24 |
Detector | MARRESEARCH |
Wavelength(s) | 0.9334 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 31.630, 32.560, 65.262 |
Unit cell angles | 90.00, 103.02, 90.00 |
Refinement procedure
Resolution | 25.000 - 1.172 |
R-factor | 0.132 |
Rwork | 0.131 |
R-free | 0.14910 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ZJ4 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.164 |
Data reduction software | XDS |
Data scaling software | Aimless (0.3.11) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.560 | 1.190 |
High resolution limit [Å] | 1.170 | 6.420 | 1.170 |
Rmerge | 0.074 | 0.046 | 0.166 |
Rmeas | 0.091 | 0.056 | 0.210 |
Rpim | 0.053 | 0.032 | 0.127 |
Number of reflections | 41471 | ||
<I/σ(I)> | 6.9 | ||
Completeness [%] | 97.3 | 56.4 | 94.6 |
Redundancy | 2.6 | 2.4 | 2.1 |
CC(1/2) | 0.993 | 0.989 | 0.936 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4 | 298 | 1.9 M Ammonium sulphate, 0.05 M sodium chloride, 0.1 M sodium acetate and 10% Glycerol |