5OAK
Structure of the dmPar3 PDZ1 domain in complex with the dmPar6 PBM
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-05-15 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1 |
Spacegroup name | P 31 |
Unit cell lengths | 60.880, 60.880, 65.050 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 40.959 - 1.500 |
R-factor | 0.1418 |
Rwork | 0.140 |
R-free | 0.16910 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2w4f |
RMSD bond length | 0.015 |
RMSD bond angle | 1.636 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.959 | 40.959 | 1.540 |
High resolution limit [Å] | 1.500 | 6.700 | 1.500 |
Rmerge | 0.043 | 0.038 | 0.848 |
Rmeas | 0.045 | 0.040 | 0.898 |
Total number of observations | 443891 | ||
Number of reflections | 43343 | 480 | 3218 |
<I/σ(I)> | 26.63 | 70.65 | 2.55 |
Completeness [%] | 99.9 | 99.6 | 98.9 |
Redundancy | 10.241 | 10.325 | 9.291 |
CC(1/2) | 0.999 | 0.999 | 0.748 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.1 M BisTris pH 6.5, 2 M Ammoniumsulfate |