5O7V
Crystal structure of the 5F-tryptophan RSL lectin in complex with Lewis x tetrasaccharide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-03-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.93221 |
Spacegroup name | F 2 3 |
Unit cell lengths | 129.883, 129.883, 129.883 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.920 - 1.280 |
R-factor | 0.12366 |
Rwork | 0.122 |
R-free | 0.14759 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2bt9 |
RMSD bond length | 0.014 |
RMSD bond angle | 2.011 |
Data reduction software | XDS (20160617) |
Data scaling software | Aimless (0.5.31) |
Phasing software | PHASER (2.7.17) |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.920 | 1.300 |
High resolution limit [Å] | 1.280 | 1.280 |
Rmerge | 0.041 | 0.456 |
Rpim | 0.016 | 0.192 |
Number of reflections | 46835 | 2300 |
<I/σ(I)> | 21.2 | 3.9 |
Completeness [%] | 99.9 | 99 |
Redundancy | 8.9 | 8.1 |
CC(1/2) | 1.000 | 0.944 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 292 | Midas 1-30: 40% 5/4 PO/OH 100 mM Mes pH 6.0 |