5O6S
UbV.B4R, a dimeric ubiquitin variant binding to BIRC4 RING
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 110 |
Detector technology | PIXEL |
Collection date | 2016-04-16 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9795 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 48.213, 71.669, 118.033 |
Unit cell angles | 90.00, 94.97, 90.00 |
Refinement procedure
Resolution | 58.790 - 2.900 |
R-factor | 0.263 |
Rwork | 0.261 |
R-free | 0.30900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ubq |
RMSD bond length | 0.008 |
RMSD bond angle | 1.060 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.2) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 58.790 | 3.070 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.169 | 0.523 |
Rpim | 0.167 | 0.513 |
Number of reflections | 8941 | 1423 |
<I/σ(I)> | 3.7 | |
Completeness [%] | 99.4 | 99.3 |
Redundancy | 2.9 | 2.9 |
CC(1/2) | 0.966 | 0.725 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.6 | 292 | (0.2 M Zinc acetate, 0.1 M phosphate-citrate pH 4.2, 40 % PEG 300 |