5O6K
Structure of Polyphosphate Kinase from Meiothermus ruber N121D
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-04-09 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.0332 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 166.552, 166.552, 94.836 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.910 - 2.903 |
R-factor | 0.2611 |
Rwork | 0.260 |
R-free | 0.29230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lc9 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.504 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.910 | 3.060 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.317 | 1.709 |
Rpim | 0.083 | 0.447 |
Number of reflections | 30049 | 4310 |
<I/σ(I)> | 7.5 | 1.4 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 14 | 14.3 |
CC(1/2) | 0.997 | 0.774 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 100 mM Tris/HCl pH 8.5 27 % (w/v) PEG 3350 200 mM Li2SO4 |