5O04
GII.10 Vietnam 026 norovirus protruding domain in complex with Nanobody Nano-26 and Nano-85
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-10-03 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 167.250, 91.480, 118.120 |
Unit cell angles | 90.00, 127.12, 90.00 |
Refinement procedure
Resolution | 47.978 - 2.300 |
R-factor | 0.2131 |
Rwork | 0.212 |
R-free | 0.24150 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.674 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.978 | 47.978 | 2.440 |
High resolution limit [Å] | 2.300 | 6.840 | 2.300 |
Rmerge | 0.079 | 0.031 | 0.592 |
Rmeas | 0.097 | 0.039 | 0.727 |
Number of reflections | 58206 | 2177 | 9174 |
<I/σ(I)> | 10.74 | 29.57 | 2.29 |
Completeness [%] | 91.7 | 86.1 | 90.1 |
Redundancy | 2.823 | 2.765 | 2.733 |
CC(1/2) | 0.996 | 0.997 | 0.763 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.1 M sodium citrate, 40% PEG600 |