5NZ3
The structure of the thermobifida fusca guanidine III riboswitch with methylguanidine
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I03 |
| Synchrotron site | Diamond |
| Beamline | I03 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2017-04-24 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 0.92019 |
| Spacegroup name | P 31 2 1 |
| Unit cell lengths | 83.491, 83.491, 66.071 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 48.775 - 2.059 |
| R-factor | 0.221 |
| Rwork | 0.218 |
| R-free | 0.27370 |
| Structure solution method | SAD |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.439 |
| Data reduction software | xia2 |
| Data scaling software | xia2 |
| Phasing software | PHENIX |
| Refinement software | PHENIX ((dev_2219: ???)) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 48.775 | 2.090 |
| High resolution limit [Å] | 2.059 | 2.060 |
| Rmerge | 0.106 | 2.233 |
| Rpim | 0.028 | 0.603 |
| Number of reflections | 31161 | 788 |
| <I/σ(I)> | 11.15 | |
| Completeness [%] | 99.9 | 95.7 |
| Redundancy | 15.07 | 14.5 |
| CC(1/2) | 1.000 | 0.723 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 293 | 0.1 M Magnesium acetate, 0.05 M MES pH 5.6, 20% v/v 2-Methyl-2,4-pentanediol |
