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5NRV

Human DNMT3B PWWP domain in complex with 6-dipropylamino-1-hexanol

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 2
Synchrotron siteSOLEIL
BeamlinePROXIMA 2
Temperature [K]100
Detector technologyCCD
Collection date2015-09-15
DetectorADSC QUANTUM 315r
Wavelength(s)0.9801
Spacegroup nameP 32 2 1
Unit cell lengths73.550, 73.550, 155.300
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution40.173 - 2.075
R-factor0.2089
Rwork0.207
R-free0.24350
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3qkj
RMSD bond length0.007
RMSD bond angle1.097
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.8.1_1168)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.1732.210
High resolution limit [Å]2.0702.070
Rmerge0.0520.658
Number of reflections301074748
<I/σ(I)>21.383.17
Completeness [%]99.899.2
Redundancy7.37.3
CC(1/2)0.9990.862
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2980.1 M MES,0.2 M Li2SO4, 23-33% PEG 3350

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PDB entries from 2024-05-15

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