5NQ3
'Porcine (Sus scrofa) Major Histocompatibility Complex, class I, with human beta2 micro globulin, presenting EFEDLTFLA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-07-07 |
Detector | DECTRIS PILATUS3 X 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 1 |
Unit cell lengths | 59.301, 59.696, 66.443 |
Unit cell angles | 81.48, 67.62, 68.60 |
Refinement procedure
Resolution | 61.440 - 1.570 |
R-factor | 0.21989 |
Rwork | 0.218 |
R-free | 0.26232 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5qq3 |
RMSD bond length | 0.017 |
RMSD bond angle | 1.818 |
Data reduction software | xia2 (2.6.1) |
Data scaling software | Aimless (0.5.26) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 61.440 | 1.610 |
High resolution limit [Å] | 1.570 | 1.570 |
Rmerge | 0.060 | 0.665 |
Number of reflections | 105240 | |
<I/σ(I)> | 5.7 | |
Completeness [%] | 96.0 | 93.3 |
Redundancy | 1.9 | 1.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | JBS screen, condition A07: 30% MPD, 100 mM Na Citrate, pH 5.6, 200 mM Ammonium Acetate |