5NQ2
'Porcine (Sus scrofa) Major Histocompatibility Complex, class I, presenting IAYERMCNI
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-04-10 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92819 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 93.478, 80.843, 61.964 |
Unit cell angles | 90.00, 119.66, 90.00 |
Refinement procedure
Resolution | 57.300 - 1.540 |
R-factor | 0.1945 |
Rwork | 0.191 |
R-free | 0.25140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PHASER |
RMSD bond length | 0.019 |
RMSD bond angle | 1.951 |
Data reduction software | xia2 (2.7.17) |
Data scaling software | Aimless (0.5.27) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 57.300 | 57.300 | 1.620 |
High resolution limit [Å] | 1.540 | 4.870 | 1.540 |
Rmerge | 0.057 | 0.032 | 0.660 |
Rmeas | 0.067 | 0.037 | 0.764 |
Rpim | 0.034 | 0.019 | 0.380 |
Number of reflections | 57504 | ||
<I/σ(I)> | 12.7 | ||
Completeness [%] | 97.6 | 93.6 | 97.2 |
Redundancy | 3.8 | 3.6 | 3.9 |
CC(1/2) | 0.998 | 0.997 | 0.778 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | JBS Screen, condition F10: 10% Jeffamine M-600, 0.1 M Na Citrate, pH 5.6, 10 mM Ferric(III)Cl |