5NPE
Crystal Structure of cjAgd31B (alpha-transglucosylase from Glycoside Hydrolase Family 31) in complex with beta Cyclophellitol Aziridine probe KY358
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-02-12 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9795 |
Spacegroup name | P 6 2 2 |
Unit cell lengths | 197.000, 197.000, 103.000 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.430 - 1.950 |
R-factor | 0.19345 |
Rwork | 0.191 |
R-free | 0.23656 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4b9y |
RMSD bond length | 0.015 |
RMSD bond angle | 1.703 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.430 | 1.990 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.071 | 0.455 |
Rpim | 0.022 | 0.149 |
Number of reflections | 85516 | 4450 |
<I/σ(I)> | 28.8 | 6.8 |
Completeness [%] | 100.0 | 100 |
Redundancy | 20 | 19 |
CC(1/2) | 1.000 | 0.984 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 1.8 M AMMONIUM SULFATE, 0.1 M HEPES (PH 7.0), 2% PEG400 |