5NOP
Structure of Mojiang virus attachment glycoprotein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-07-30 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.96863 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 60.040, 102.310, 162.060 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.325 - 1.940 |
R-factor | 0.1837 |
Rwork | 0.182 |
R-free | 0.22240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vsm |
RMSD bond length | 0.006 |
RMSD bond angle | 0.782 |
Data reduction software | xia2 (0.3.6.3) |
Data scaling software | xia2 (0.3.6.3) |
Phasing software | PHENIX (dev_2283) |
Refinement software | PHENIX (dev_2283) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.330 | 49.330 | 1.990 |
High resolution limit [Å] | 1.940 | 8.680 | 1.940 |
Rmerge | 0.156 | 0.036 | 0.820 |
Number of reflections | 74486 | ||
<I/σ(I)> | 8.7 | 30.4 | 1.9 |
Completeness [%] | 99.7 | 99.1 | 98.4 |
Redundancy | 5.2 | 4.6 | 5 |
CC(1/2) | 0.992 | 0.999 | 0.657 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 298 | 16.4% PEG 6000, 0.82 M lithium chloride, 0.082 M citrate pH 5.0 |