5NNI
Dimer structure of Sortilin ectodomain crystal form 2, 3.2 Angstrom
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-08-29 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.99998 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 79.842, 137.170, 147.560 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 62.195 - 3.210 |
R-factor | 0.2288 |
Rwork | 0.227 |
R-free | 0.25480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5nmt |
RMSD bond length | 0.002 |
RMSD bond angle | 0.686 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11_2567: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 62.200 | 3.325 |
High resolution limit [Å] | 3.210 | 3.210 |
Rmerge | 0.077 | 0.158 |
Rpim | 0.033 | 0.158 |
Number of reflections | 27112 | 2654 |
<I/σ(I)> | 14.1 | 4.37 |
Completeness [%] | 99.7 | 99.59 |
Redundancy | 6.3 | 2 |
CC(1/2) | 0.997 | 0.945 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 291 | 0.2 M NH4Cl, 1 mM CaCl2 and 20% PEG 3350 (w/v), pH 5.0 |