5NM8
Structure of PipY, the COG0325 family member of Synechococcus elongatus PCC7942, with PLP bound
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I03 |
| Synchrotron site | Diamond |
| Beamline | I03 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2016-05-13 |
| Detector | PSI PILATUS 6M |
| Wavelength(s) | 0.9763 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 46.627, 98.937, 103.737 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 71.600 - 1.930 |
| R-factor | 0.19694 |
| Rwork | 0.195 |
| R-free | 0.23821 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | PDB file 5NLC chain A |
| RMSD bond length | 0.015 |
| RMSD bond angle | 1.666 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 71.600 | 1.970 |
| High resolution limit [Å] | 1.930 | 1.930 |
| Rmerge | 0.067 | 0.051 |
| Rpim | 0.020 | 0.016 |
| Number of reflections | 37132 | 2409 |
| <I/σ(I)> | 22.3 | 4.5 |
| Completeness [%] | 99.9 | 98.7 |
| Redundancy | 12.6 | 10.8 |
| CC(1/2) | 0.990 | 0.870 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 294 | 0.1 M Hepes-Na pH 7.5 0.2 M Calcium acetate 18% (wt/vol) Polyethylene glycol 8000 |
